XDigitize (Popularity:  )
A visualization software system for evaluation of hybridisation experiments.
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Premier Biosoft International (Popularity: )
Developers of software for real time PCR primer design, TaqMan, molecular beacons, DNA microarray analysis, drawing restriction plasmid maps, gateway ...
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Meta-MEME v2.0.1 (Popularity: )
Software toolkit for building and using motif-based hidden Markov models of DNA and proteins - from the Univ. of California-San ...
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Linux Software Encyclopedia - Bioinformatics (Popularity: )
Links to Bioinformatics software for Linux. From the Linux Software Encyclopedia.
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Molecular Evolutionary Genetics Analysis (MEGA2) software (Popularity: )
Provides free downloadable MEGA2 software for use in comparative sequence analysis of genetic data. Program for Win32 platforms.
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Computer Program for Polyphasic Taxonomy Analysis (Popularity: )
The proBiosys suite of programs compares phenetic, chemotaxonomic and nucleic acid sequence data. Algorithms for polyphasic taxonomy are available to ...
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HMMER - profile hidden Markov models for sequence analysis (Popularity: )
Sean Eddy's tools to build HMMs from multiple alignments, align sequences to HMMs, calculate e-scores, and other tools
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The Sanger Centre: Software (Popularity: )
Production software used at the Sanger Centre, physical mapping software, informatics and analysis software, and data formats
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PubCrawler - An Update Alerting Service for PubMed and GenBank (Popularity: )
Software and an online service for periodically performing predefined searches at NCBI, reporting new results by email or on the ...
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Phred/Phrap/Consed System Home Page (Popularity: )
basecaller / assembler / sequencer finisher and related tools from the UW Genome Center.
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Artemis: A DNA Sequence Viewer and Annotation Tool (Popularity: )
Java program to display a DNA sequence, annotated with features, ORFs. Reads many input formats.
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NCBI BLAST (Popularity: )
BLAST (Basic Local Alignment Search Tool) is a set of similarity search programs designed to explore all of the available ...
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WU-BLAST Archives (Popularity: )
WU-BLAST: The Washington University BLAST. "...faster at any sensitivity, more sensitive at any speed, the first BLAST with gapped alignments ...
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GeneRunner for Windows (Popularity: )
A fairly old sequence analysis tool for everyday lab use. Formerly a commercial product - now "abandonware."
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DNA-Star - Lasergene (Popularity: )
Commercial sequence analysis and manipulation suite for Windows and Macintosh.
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DARWIN (Popularity: )
An interactive tool for peptide and nucleotide sequence analysis
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PHRED - Base-Calling Software with Quality Information (Popularity: )
A widely-used program for calling DNA sequence bases from sequencer trace files.
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GDE for Linux (Popularity: )
An integrated linux environment for bioinformatics and evolutionary analysis based on the Genetic Data Environment (GDE). Contains binaries for Linux ...
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AcaClone pDRAW32 (Popularity: )
Freeware DNA cloning, analysis and visualization software.
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Verbumculus Genetic Sequence Analyzer (Popularity: )
An interesting tool to discover and visualize over- or under-represented words in genetic sequences. Executable for Sparc-Solaris, Sparc-Intel or Linux-Intel. ...
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