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AcaClone pDRAW32 (Popularity:  )
http://www.acaclone.com
Freeware DNA cloning, analysis and visualization software.
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AceDB (Popularity: )
http://www.acedb.org/
A hierarchical database system for displaying genomic data (originally C. elegans), suitable also for displaying other scientific data.
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ARCiB -- Accessible Retired Computers in Biology (Popularity: )
http://arcib.dowling.edu/
NSF supported project to make old computers accessible to new software in bioinformatics. Provides transitional and supplemental support, especially in ...
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Bielefeld University Bioinformatics Server (Popularity: )
http://bibiserv.techfak.uni-bielefeld.de/
BiBiServ supports Internet-based collaborative research, software development and distance education in bioinformatics.
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BioJava.org (Popularity: )
http://biojava.org/
The BioJava Project is an open-source project dedicated to providing Java tools for processing biological data.
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Bionconductor (Popularity: )
http://www.bioconductor.org/
The Bioconductor project produces an open source software framework that will assist biologists and statisticians working in bioinformatics, with primary ...
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Bioperl.org (Popularity: )
http://www.bioperl.org
The Bioperl Project is an international association of developers of open source Perl tools for bioinformatics, genomics and life science ...
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BioPython.org (Popularity: )
http://biopython.org/
The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology.
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BioQuery (Popularity: )
http://www.bioquery.org/
Tools that searches multiple biomedical databases from your desktop.
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Computer Program for Polyphasic Taxonomy Analysis (Popularity: )
http://www.proBiosys.com
The proBiosys suite of programs compares phenetic, chemotaxonomic and nucleic acid sequence data. Algorithms for polyphasic taxonomy are available to ...
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Gints (Popularity: )
http://gints.free.Fr
Object-oriented regulation network simulator written in Java. Includes downloadable software and documentation. The site is in French and English.
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LucID Professional (Popularity: )
http://www.lucidcentral.com/
Software for creating interactive keys for biology, taxonomy, medicine, and agriculture.
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Metalifesocieties (Popularity: )
http://metalifesocieties.tripod.com/
Makes available various bioinformatics algorithms, which perform all essential tasks in sequence analysis and sequence-based predictions.
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Molecular Evolutionary Genetics Analysis (MEGA2) software (Popularity: )
http://megasoftware.net
Provides free downloadable MEGA2 software for use in comparative sequence analysis of genetic data. Program for Win32 platforms.
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MolTalk (Popularity: )
http://www.moltalk.org/
Software development for structural bioinformatics. Runs on Unix, Windows and MacOSX.
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Phred/Phrap/Consed System Home Page (Popularity: )
http://www.phrap.org/
basecaller / assembler / sequencer finisher and related tools from the UW Genome Center.
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Premier Biosoft International (Popularity: )
http://www.PremierBiosoft.com
Developers of software for real time PCR primer design, TaqMan, molecular beacons, DNA microarray analysis, drawing restriction plasmid maps, gateway ...
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PubCrawler - An Update Alerting Service for PubMed and GenBank (Popularity: )
http://www.pubcrawler.ie
Software and an online service for periodically performing predefined searches at NCBI, reporting new results by email or on the ...
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The ARB Project (Popularity: )
http://www.arb-home.de
A free sequence database application for Unix. It includes a sequence editor, several sequence aligners, phylogeny reconstruction tools, probe/primer search ...
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WU-BLAST Archives (Popularity: )
http://blast.wustl.edu/
WU-BLAST: The Washington University BLAST. "...faster at any sensitivity, more sensitive at any speed, the first BLAST with gapped alignments ...
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