Sponsored Links:
Tree Puzzle (Popularity:  )
http://www.tree-puzzle.de/
Computer program to reconstruct phylogenetic trees from molecular sequence data by maximum likelihood.
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Nona - A Quick Guide to the Commands (Popularity: )
http://www.gwu.edu/~clade/faculty/lipscomb/Nonadoc.html
A brief overview of using Nona for phylogenetic analysis.
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SuperTree (Popularity: )
http://www.tcd.ie/Botany/NS/SuperTree.html
Implements various supertree building methods. Available in Linux/Unix and PC versions.
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Phylo-Win (Popularity: )
http://pbil.univ-lyon1.fr/software/phylowin.html
Graphical color interface for molecular phylogenetic inference. It performs neighbor-joining, parsimony, and maximum likelihood methods and bootstrap with any of ...
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PAML (Popularity: )
http://abacus.gene.ucl.ac.uk/software/paml.html
Phylogenetic analyses of DNA or protein sequences using maximum likelihood.
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Mesquite (Popularity: )
http://mesquiteproject.org/mesquite/mesquite.html
Experimental, modular software for evolutionary biology, designed to help biologists analyze comparative data about organisms.
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PAUP* (Popularity: )
http://paup.csit.fsu.edu/
PAUP is the most widely used package for phylogenetic inference, and now implements maximum likelihood and distance methods as well ...
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IUBio Archive (Popularity: )
http://ftp.bio.indiana.edu/IUBio-Software+Data/molbio/evolve/
Molecular evolution software
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Joe Felsenstein's list of phylogeny programs (Popularity: )
http://evolution.genetics.washington.edu/phylip/software.html
Probably the most comprehensive
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Georg Fuellen (Popularity: )
http://www.techfak.uni-bielefeld.de/bcd/Curric/MulAli/welcome.html
Multiple Alignment Resources
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IUBio Archive (Popularity: )
http://ftp.bio.indiana.edu/IUBio-Software+Data/molbio/mac/
Macintosh molecular biology software
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Classification Society of North America (Popularity: )
http://www.pitt.edu/~csna/software.html
List of cluster analysis software
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Genetics Software from the Slatkin Lab (Popularity: )
http://ib.berkeley.edu/labs/slatkin/software.html
Links to sites for downloading phylogenetic software.
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ALICE Biodiversity Software (Popularity: )
http://ds.dial.pipex.com/town/square/fd95/
Database management system for managing data about taxa, species, genera, varieties and cultivars.
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Expert Center for Taxonomic Identification (Popularity: )
http://www.eti.uva.nl/
The Linnaeus II taxonomic content management system supports creating taxonomic databases, computer aided identification keys, interactive biogeographic maps, and literature ...
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Digital Taxonomy (Popularity: )
http://www.geocities.com/RainForest/Vines/8695/
An attempt to present a wide-ranging resource of information for biodiversity data management in the World Wide Web, and promote ...
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PaleoTax (Popularity: )
http://www.paleotax.de
The program can give an overview of taxonomic and other information of a taxa group. Recorded data can be assessed ...
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PICKEY (Popularity: )
http://www.zin.ru/projects/pickey
An interactive multi-entry polychotomous key for identification of organisms by intensive use of images.
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Lucid (Popularity: )
http://www.lucidcentral.com/
A system for creating, maintaining, distributing and playing interactive identification keys.
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DeltaAccess (Popularity: )
http://www.bgbm.fu-berlin.de/projects/DeltaAccess/
A SQL interface to DELTA, implemented in Microsoft Access 97.
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