Related:
Genome Annotation Tool
- Annotation
- Dance Annotation
- Image Annotation
- Multi Tool Green 7 Tool W Led
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Artemis: A DNA Sequence Viewer and Annotation Tool (Popularity:  )
(Score: 24.51)
http://www.sanger.ac.uk/Software/Artemis/
Java program to display a DNA sequence, annotated with features, ORFs. Reads many input formats.
Category:
Main\Science\Biology\Bioinformatics\Software
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Artemis Software (Popularity: )
(Score: 20.36)
http://www.sanger.ac.uk/Software/Artemis/
Available from the Sanger Institute of the Wellcome Foundation, is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses.
Category:
Main\Science\Biology\Biochemistry and Molecular Biology\Gene Expression
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The ARB Project (Popularity: )
(Score: 19.97)
http://www.arb-home.de
A free sequence database application for Unix. It includes a sequence editor, several sequence aligners, phylogeny reconstruction tools, probe/primer search and generation, genome annotation and visualization. In addition to the integrated user-interface ...
Category:
Main\Science\Biology\Bioinformatics\Software
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AnnHyb - Nucleotidic Sequence Manager (Popularity: )
(Score: 18.42)
http://bioinformatics.org/annhyb/
Free software for working with and managing nucleotide sequences in multiple formats. Many features including sequence annotation, restriction analysis, pattern searching, retrieval from servers. Released under GNU Public Licence.
Category:
Main\Science\Biology\Bioinformatics\Software
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PIR-International Protein Sequence Database (Popularity: )
(Score: 17.89)
http://pir.georgetown.edu
produces a comprehensive, non-redundant, and expertly annotated protein sequence database. PIR features integrated annotation search to support functional/structural genomics and proteomic research.
Category:
Main\Science\Biology\Bioinformatics\Online Services
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Entelechon Backtranslation tool (Popularity: )
(Score: 17.60)
http://www.entelechon.com/eng/backtranslation.html
Online backtranslation tool for translating a protein sequence into a DNA sequence. The codon usage can be downloaded from a database and adjusted manually for each amino acid, if required. Java applet.
Category:
Main\Science\Biology\Bioinformatics\Online Services
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Salk Institute Genomic Analysis Laboratory (Popularity: )
(Score: 14.81)
http://signal.salk.edu/
Global expression studies. Features genomic annotation, full-length cDNA sequence and insertion mutant databases.
Category:
Main\Science\Biology\Genetics\Eukaryotic
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Linguistic Annotation (Popularity: )
(Score: 14.35)
http://www.ldc.upenn.edu/annotation/
Tools and formats for speech and text annotation
Category:
Main\Science\Social Sciences\Linguistics\Phonetics and Phonology
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Annotate (Popularity: )
(Score: 13.60)
http://www.coli.uni-sb.de/sfb378/negra-corpus/annotate.html
Tool for semi-automatic graphic annotation of corpora. License, documentation, screenshot. Requires GCC and MySQL, in addition to registration.
Category:
Main\Computers\Artificial Intelligence\Natural Language\Tools
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Chromosome 7 Annotation Project (Popularity: )
(Score: 13.48)
http://www.chr7.org/
A research community initiative for functional and medical annotation of this chromosome. Toronto Centre for Applied Genomics.
Category:
Main\Science\Biology\Genetics\Eukaryotic
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BioTools Incorporated (Popularity: )
(Score: 13.32)
http://www.biotools.com
Provides software tools to accelerate the research process: GeneTool for DNA sequence analysis, PepTool for protein sequence analysis, and ChromaTool for DNA sequence assembly.
Category:
Main\Science\Biology\Bioinformatics\Companies
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DARWIN (Popularity: )
(Score: 12.95)
http://cbrg.inf.ethz.ch/Darwin/index.html
An interactive tool for peptide and nucleotide sequence analysis
Category:
Main\Science\Biology\Bioinformatics\Software
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DGA: Dependency Grammar Annotator (Popularity: )
(Score: 12.50)
http://phobos.cs.unibuc.ro/roric/DGA/dga.html
A Java-based interactive graphical tool for the syntactic annotation of texts within a corpus, guided by the formal framework of Dependency Grammars. Demo, download and documentation.
Category:
Main\Science\Social Sciences\Linguistics\Computational Linguistics
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Linear Complexity: A Literature Survey (Popularity: )
(Score: 12.46)
http://www.ciphersbyritter.com/RES/LINCOMPL.HTM
The linear complexity (LC) of a sequence is the size in bits of the shortest linear feedback shift register (LFSR) which can produce that sequence. The measure speaks to the difficulty of generating, and perhaps analyzing, a particular sequence.
Category:
Main\Science\Math\Applications\Information Theory
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SWISS-PROT + TrEMBL (Popularity: )
(Score: 12.34)
http://www.ebi.ac.uk/swissprot/
The SWISS-PROT database contains high-quality annotation, is non-redundant and cross-referenced to many other databases. SWISS-PROT is accompanied by TrEMBL, a computer-annotated supplement, which contains the translations of all coding sequences (CDS ...
Category:
Main\Science\Biology\Bioinformatics\Online Services
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BLAST (Popularity: )
(Score: 12.30)
http://www.ncbi.nlm.nih.gov/BLAST/
NCBI's sequence similarity search tool designed to support analysis of nucleotide and protein databases.
Category:
Main\Science\Biology\Bioinformatics\Online Services
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LogSequencer (Popularity: )
(Score: 12.30)
http://www.logsequencer.com/
A tool that reads your log files and generates Sequence Diagrams based on the logged information. Use it for documentation and debugging.
Category:
Main\Computers\Programming\Languages\Java
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Sequence Dancing with Diane and Peter (Popularity: )
(Score: 12.28)
http://www.sequencedancing.freeserve.co.uk
All about modern sequence dancing in England. Details of the new dances and links to events and places to dance. Sequence dancing is based on modern ballroom dancing and very popular.
Category:
Main\Arts\Performing Arts\Dance\Ballroom
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NEBcutter (Popularity: )
(Score: 11.94)
http://tools.neb.com/NEBcutter/index.php3
On-line DNA sequence tool to find large, non-overlapping, open reading frames and sites for all restriction enzymes-from New England BioLabs.
Category:
Main\Science\Biology\Bioinformatics\Online Services
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iMarkup (Popularity: )
(Score: 11.93)
http://www.imarkup.com/products/imarkup_client.asp
Web page annotation tool, that allows notes, and other markups to be made from within your web browser to 'live' web pages. These markups will be remembered, and automatically displayed the next time you visit that page. Requires Internet Explorer 4.0 ...
Category:
Main\Computers\Software\Shareware\Windows
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PeptideMass (Popularity: )
(Score: 11.82)
http://www.expasy.org/tools/peptide-mass.html
Web-based tool for calculating the molecular weight of peptides by sequence, in oxidised, reduced or IAA forms, using its one-letter code, provided by ExPasy, Switzerland.
Category:
Main\Science\Chemistry\Analytical\Bioanalytical Chemistry
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HIV Sequence Database (Popularity: )
(Score: 11.81)
http://www.hiv.lanl.gov:80/content/index
Collection HIV and related genetic sequence data and computer analyses - from the Los Alamos Natl. Lab.
Category:
Main\Science\Biology\Microbiology\Virology
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Software packages developed at the CMRR (Popularity: )
(Score: 11.77)
http://www.cmrr.umn.edu/downloads/index.shtml
Stimulate - multifunctional image analysis tool, PhysioFix - adjust for respiration and cardio effects, PhysioFix for Matlab, Cluster_prob - clustered pixel probability, Sarcalc - energy used by your pulse sequence, MTM - Multi-Taper Methods for signal ...
Category:
Main\Science\Chemistry\Nuclear Magnetic Resonance\Software
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Metalifesocieties (Popularity: )
(Score: 11.76)
http://metalifesocieties.tripod.com/
Makes available various bioinformatics algorithms, which perform all essential tasks in sequence analysis and sequence-based predictions.
Category:
Main\Science\Biology\Bioinformatics\Software
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Lazy C++ (Popularity: )
(Score: 11.74)
http://www.lazycplusplus.com
Lzz (Lazy C++) is a rapid development tool. Given a sequence of declarations Lzz will generate header and source files.
Category:
Main\Computers\Programming\Languages\C++
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GeneRunner for Windows (Popularity: )
(Score: 11.69)
http://www.generunner.com
A fairly old sequence analysis tool for everyday lab use. Formerly a commercial product - now "abandonware."
Category:
Main\Science\Biology\Bioinformatics\Software
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Sequence V1.5 (Popularity: )
(Score: 11.48)
http://www.kombyonyx.com
A program for high throughput mass spectrometric sequence determination of linear and cyclic peptides originating from split-and-pool combinatorial libraries.
Category:
Main\Science\Chemistry\Analytical\Software
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3D-PSSM Fold Recognition (Popularity: )
(Score: 11.48)
http://www.sbg.bio.ic.ac.uk/~3dpssm/
Combines sequence and structural information for predicting the structure and/or function of your protein sequence, and can detect remote homologies beyond PSI-Blast.
Category:
Main\Science\Biology\Bioinformatics\Online Services
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AlgoNomics (Popularity: )
(Score: 11.48)
http://www.algonomics.com
Provides online, as well as on-site, tools for protein sequence analysis and structure prediction. Focused on the relationship between the amino acid sequence of proteins and their function.
Category:
Main\Science\Biology\Bioinformatics\Companies
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On-Line Encyclopedia of Integer Sequences (Popularity: )
(Score: 11.48)
http://www.research.att.com/~njas/sequences/
Identify a sequence by entering few terms in the sequence. Additional information includes examples, formulas, and related links.
Category:
Main\Science\Math\Reference
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The Protein Information Resource (Popularity: )
(Score: 11.40)
http://pir.georgetown.edu
In collaboration with the Munich Information Center for Protein Sequences (MIPS) and the Japanese International Protein Sequence Database (JIPID) maintains the PIR-International Protein Sequence Database --- a comprehensive, annotated, and non-redundant ...
Category:
Main\Science\Biology\Bioinformatics\Online Services
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QDA Miner (Popularity: )
(Score: 11.38)
http://www.simstat.com/QDAMiner.htm
User coded segment tool featuring coding sequence, co-occurrences, clustering, multidimensional proximity plots, correspondence analysis, heatmaps. Presentation, screenshot, download and prices.
Category:
Main\Science\Social Sciences\Methodology\Qualitative
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Open C++ (Popularity: )
(Score: 11.37)
http://www.csg.is.titech.ac.jp/~chiba/openc++.html
C++ version with Metaobject Protocol; tool of source (code) to source translation for C++. Allows easily implementing varied kinds of translation, to define new: syntax, annotation, object behaviors; extensions, optimizations, runtime protocols. [Open ...
Category:
Main\Computers\Programming\Languages\C++
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Sequence Alignment and Modeling System (Popularity: )
(Score: 11.32)
http://www.cse.ucsc.edu/research/compbio/sam.html
Implementation of hidden Markov models for sequence analysis. Free UNIX software for nonprofit groups, and sequences can be submitted online.
Category:
Main\Science\Biology\Bioinformatics\Online Services
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Verbumculus Genetic Sequence Analyzer (Popularity: )
(Score: 11.25)
http://www.cs.ucr.edu/~stelo/Verbumculus/
An interesting tool to discover and visualize over- or under-represented words in genetic sequences. Requires Java support in browser. Also available as a downloadable program.
Category:
Main\Science\Biology\Bioinformatics\Online Services
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NetNglyc (Popularity: )
(Score: 11.15)
http://www.cbs.dtu.dk/services/NetNGlyc/
N-glycosylation site prediction in human proteins using artificial neural networks that examine the sequence context of Asn-Xaa-Ser/Thr sequons, from Center for Biological Sequence Analysis, Technical University of Denmark.
Category:
Main\Science\Biology\Biochemistry and Molecular Biology\Biomolecules
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Metalife AG (Popularity: )
(Score: 11.10)
http://metalife.orbitel.bg
Developing bioinformatics software for sequence analysis, sequence based predictions, and biological pathway analysis and visualization.
Category:
Main\Science\Biology\Bioinformatics\Companies
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Genetic Code (Popularity: )
(Score: 11.10)
http://en.wikipedia.org/wiki/Genetic_code
Wikipedia article on the relationship between the nucleic acid base sequence and the corresponding polypeptide amino acid sequence.
Category:
Main\Science\Biology\Biochemistry and Molecular Biology\Gene Expression
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Sequence Analysis for Mac OS X (Popularity: )
(Score: 11.09)
http://www.informagen.com/SA/
A freeware Mac OS X application written in Java that does many standard types of DNA and protein sequence analysis tasks.
Category:
Main\Science\Biology\Bioinformatics\Software
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The Nautilus Spiral - A Sequence of Triangles (Popularity: )
(Score: 11.03)
http://www.theoldpro.net/ms/nautilusproblem
Studying the expanding sequence of isosceles right triangles utilizing recursive and explicit functions. With diagrams, explanations, and tables.
Category:
Main\Science\Math\Education\Precalculus
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