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OpenRasMol (Popularity:  )
http://www.openrasmol.org/
Provided for the convenience of users and software developers of open source versions of RasMol.
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Pymol (Popularity: )
http://www.pymol.org
A free and flexible molecular graphics and modelling package which can be also used to generate animated sequences.
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ProteinScope (Popularity: )
http://www.proteinscope.com
ProteinScope is a free program to view and create animations of Protein Data Bank PDB files.
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Biodesigner and iMol (Popularity: )
http://www.pirx.com/
A molecular viewer for Windows9x systems with sequence editor and protein builder. Free for academic use. Additionaly the iMol molecule ...
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Jmol (Popularity: )
http://jmol.sourceforge.net/
Open source molecule viewer written in Java. It runs as a standalone application and as a web browser applet.
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Viewmol (Popularity: )
http://viewmol.sourceforge.net/
An open-source graphical front end for computational chemistry programs such as Gaussian, Gamess, and Mopac. Available for Linux, FreeBSD, Mac ...
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ChemCraft (Popularity: )
http://www.chemcraftprog.com
Windows-based program for visualization of molecular structures, vibrational modes, molecular orbitals, energy gradient and other properties from log files produced ...
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ChemInnovation Software (Popularity: )
http://www.cheminnovation.com/
Chemistry 4-D Draw high-quality structures quickly by entering molecular names. It also assigns systematic names, drawing and text editing.
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JChemPaint (Popularity: )
http://jchempaint.sourceforge.net/
Free, open-source editor for 2D chemical structures. Written in Java.
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JMolDraw (Popularity: )
http://jmoldraw.chemit.at
Drawing applet written in Java for use in database applications in chemistry.
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EasyChem (Popularity: )
http://easychem.sourceforge.net/
Free Linux structure drawing program, designed with emphasis on press quality, speed of, precision, and ability to add arbitrary ornaments ...
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